SE2850347

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9352
  • Sorghum bicolor
  • SE2850347
  • PIF/harbinger
  • To14
  • chromosome_9:3560411-3560659
  • TAA
  • AGGCCTTTTTTAGTTCCAAATTTTTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA       T         -   TTT           --A  AA    AGCATTTT       ATTTGACAAATATTGTCCGATCATGGACTAACTAGGCTCAAGAGATTCGTCTCGCAAATTACAGGTAG
  AGGCCTT TTTAGTTCC AAA   TTTTGCAAAAT   GG  TAGT        TGTTTGT                                                                    
  ||||||| ||||||||| |||   |||||||||||   ||  ||||        |||||||                                                                     
  TCCGGAA AAATCAAGG TTT   AAAACGTTTTA   AG  TCTA        AAGAGTA                                                                    
AA       C         G   TCT           AAG  --    --------       GTGTAGCTTAGAACGCCGTGTACGTACTTCGTGATTTATATCTATTTTCTTTATTGATTAATGTGTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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