SE2850349

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9354
  • Sorghum bicolor
  • SE2850349
  • PIF/harbinger
  • To3
  • chromosome_4:60347475-60347722
  • TTG
  • GGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               CACTCC     CCAAAAACTTTTCAAGATTATTCGTCATATCAAATCTTCGAGCACATACATAAAGCATTAGATATAGACGAAAATAAAAACTAATTGCACAGTTTGCCT
  GGGCCTTGTTTAGTT      GAAAA                                                                                                   
  |||||||||||||||      |||||                                                                                                    
  TCCGGAACAAATCAA      GCTTT                                                                                                   
 T               -----A     TTTTAAGCCTAAAGCCGTGATATATTAAAAGCAAAAATAAACTGTTTATAATAGGTTAATATCTGATTGATCTGAGTTTTCTAAGTAGAGCATTAAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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