Plant MITE

SE2830350

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9355
Sorghum bicolor
SE2830350
hAT
Hat30
chromosome_8:5242522-5242721
ATTTATAT
TATATCATGGTTTTAAAT

Secondary structure and sequence

TSD TIR

5'

3'

ATT  T    T          CTTCC     AGCTGCCGCTATAGCCCGCTATAGCCTTTTGAGACAGGGTACCGCTATTTGTGTTCATGTACAATTTAG
   TA ATCA GGTTTTAAAT     GCTAT                                                                     
   || |||| ||||||||||     |||||                                                                      
   AT TAGT CTAAAATTTA     CGATT                                                                     
TAT  T    T          TCGCC     CCACAAATCGCCAAATACAGATTTTGTCGATTATCGCTTCGATTTAGCTCGTTATCGCCCTATATCGCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830350

ATTTATATCATGGTTTTAAATCTTCCGCTATAGCTGCCGCTATAGCCCGCTATAGCCTTTTGAGACAGGGTACCGCTATTTGTGTTCATGTACAATTTAGCCGCTATATCCCGCTATTGCTCGATTTAGCTTCGCTATTAGCTGTTTTAGACATAAACCGCTAAACACCTTAGCCCGCTATTTAAAATCTTGATTTATAT

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