SE2850352

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9357
  • Sorghum bicolor
  • SE2850352
  • PIF/harbinger
  • To14
  • chromosome_3:51668620-51668865
  • TAA
  • AGGCCTTGTTTAGTTTCCAAAATATTTTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            G         T       ATAATT       TTCTCCGTCACATCGAATCTTGCGGTACATGCATGAAACACTAAATATAGATAAAAGAAATAACTAATTACACAGTTTACT
  AGGCCTTGTTTA TTTCCAAAA ATTTTGT      TTTCACA                                                                                 
  |||||||||||| ||||||||| |||||||      |||||||                                                                                 T
  TCCGGAACAAAT GAAGGTTTT TAAAACG      TTTTATC                                                                                 
AA            -         C       ------       CTTATAATGGTAAAAGCAAACATAAATTTATAATAAGTTAGTATATGATTGATCCGAATTTTCTAAGCAGAGTGTTTAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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