SE2850353

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9358
  • Sorghum bicolor
  • SE2850353
  • PIF/harbinger
  • To51
  • chromosome_8:4625875-4626205
  • TAA
  • AGAGCATCTTCAATAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                -----       AAATTC  -----     -    ATTGTGATTTGGCAAGTTGCTAAAGCATATGACAAGCGAGATTTTCTTTTGTCCCCAACAGTTTGCCAATTGGGCTTGATAAATTTAAAAAGAAGACCCACAACCAACAACCAAATCAAC
  AGAGCATCTTCAATAG     TTTAGTA      AC     TTGTC AAAT                                                                                                                        
  ||||||||||||||||     |||||||      ||     ||||| ||||                                                                                                                        T
  TCTCGTAGAGGTTGTC     ATTTACT      GA     AAAGA CAAA                                                                                                                        
AA                CAAAG       -----T  ACAAT     A    TAAACCGTTTTGATCTTTTATCAGTGAGTTTGTCAAACCATTTACCCAACGGTAGAAAACCGTTGAACGATAGGTCGTCGTGGCGCGCGGATATAAACAATTGAACGATAGGTCGTCTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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