Plant MITE

SE2850354

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9359
Sorghum bicolor
SE2850354
PIF/harbinger
To14
chromosome_10:54227533-54227782
TAA
AGGCCTTGTTTAGATGCAAAAAAATTTGAAG

Secondary structure and sequence

TSD TIR

5'

3'

TA           A      -AA       G   -TTTG   -----  G      TT   TT    ---ATTT    AATATTGTCCAACTATGGACTAACTAGGCTCAAAAGATTCGTCTTGTAATTT
  AGGCCTTGTTT GATGCA   AAAATTT AAG     ACA     CT TATCAT  TCG  TTTT       GACA                                                    
  ||||||||||| ||||||   ||||||| |||     |||     || ||||||  |||  ||||       ||||                                                    A
  TCCGGAACAAA CTGTGT   TTTTAAG TTT     TGT     GG GTAGTG  AGC  AGAA       TACG                                                    
AA           G      GGG       G   TGAAA   TCTAA  G      -T   TT    ATCTGCA    TACTTCGTAATTTATATCTATTTTTTCTGATTGATTAATGTGTTAAATAGAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850354

TAAGGCCTTGTTTAGATGCAAAAAAATTTGAAGTTTGACACTGTATCATTTTCGTTTTTTATTTGACAAATATTGTCCAACTATGGACTAACTAGGCTCAAAAGATTCGTCTTGTAATTTACAGATAAATTGTGTAATTAGTTAGTCTTTTTTATCTATATTTAATGCTTCATGCATACGTCTAAAGATTCGATGTGATGGGGAATCTTGTAAAGTTTTGGAATTTTGGGTGTGTCGAAACAAGGCCTAA

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