SE2830357

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9362
  • Sorghum bicolor
  • SE2830357
  • hAT
  • Hat16
  • chromosome_6:42564973-42565479
  • TTTGTGCA
  • TGTGCATATAGTTGGTCATGCAGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      --     T       GCA   -C      -  TT      -        CACGGCATTTTGGCCCGGCCCGAGCACGGCACGGCCCGACAACTACCGTGCCTGGGCTGCCACCGTGGCCCGTGGCATGGCTCAGGCACGGCCCGACGGCCCGGTGCTTAATGGTCCAGTAAAAAATATAGCTTTTTAATTCTAAAAAAGAGAAAATATAGGTCTGTTGGCCCATCCATCCATCCTGATTGGCCTGTTAAG
  TGTGCA  TATAG TGGTCAT   GCC  GTGGCC CG  GGCACG GCCCGCGG                                                                                                                                                                                                         
  ||||||  ||||| |||||||   |||  |||||| ||  |||||| ||||||||                                                                                                                                                                                                          
  ACGTGT  ATATC ACCGGTA   CGG  CGGCCG GC  CGGGCC CCGGGCCG                                                                                                                                                                                                         
        TT     T       GCC   CA      G  --      A        CACGGCACGGCACAGACGGGGCCCGGCGCGGCACGGCAGCACGGCCGGCCCGGCACGGTAGTGGCACGGAGCACGGCCCCCATACCGGGTTCCGTGTCGGGCGCCCGGCCGGGCTTCCGTGCCGCCCGGTGGCCCGGTTCCAGCACGGTCCGGTCATCGTCCGGATATAAAAAAAAACAAATCTTAATCATCCGATGTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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