SE2850358

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9363
  • Sorghum bicolor
  • SE2850358
  • PIF/harbinger
  • To31
  • chromosome_1:54702988-54703296
  • TAA
  • GGCCCGTTTAGATTTGAAATTTTTTGTCTTAAAGAATTTTTTTTTAGAATTGGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAG    C                     -   -TAA    TT      TA   TTG   TCTAAG                    A   AA       T    A                                              -   AA
    GGCC GTTTAGATTTGAAATTTTTTG TCT    AGAA  TTTTTT  GAA   GAG      AACTAAATGGGGCTAAAAAA TTT  GGCTAAA TTTT GGCTGCAACTGTGCACGCACTCCCATGGAAGCCCACCAATGACAAC TGC  
    |||| ||||||||||||||||||||| |||    ||||  ||||||  |||   |||      |||||||||||||||||||| |||  ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||   
    CCGG CAAATCTAAACTTTAAAAAAC AGA    TCTT  AAAAAA  CTT   CTC      TTGATTTGCCCCGGTTTTTT AAA  CCGGTTT AAAA CCGACGTTGACACGTGCGTGAGGGTATCTTCGGGTGGTTACTGTTG ACG  
AATA    A                     C   TTTC    TT      CA   TAA   ----CG                    A   CC       T    C                                              T   TC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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