SE2850362

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9367
  • Sorghum bicolor
  • SE2850362
  • PIF/harbinger
  • To4
  • chromosome_5:57145482-57145717
  • TAA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               TTCAAA       ---------    TTCCTCGTCACATCGAATCTTTAAATGCTTGATGGAGCATTAAATATAGATAAAAGAAATAACTAATTGCATAGTTTGAC
  AGGCCTTGTTTAGTT      AAAATTT         AAGA                                                                                
  |||||||||||||||      |||||||         ||||                                                                                T
  TCCGGAACAAATCAA      TTTTAAA         CATG                                                                                
AA               --CACC       AACCGAAAC    ATATCGTGAAAGCAAACATAAACCATTAATAATAGGTTAGTATCTGATTGATCCGAGTTTTCTAGGCAGAGTGTTTAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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