Plant MITE

SE2850365

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9370
Sorghum bicolor
SE2850365
PIF/harbinger
To22
chromosome_3:68296476-68296724
TTA
AGAGCAAGTATTAT

Secondary structure and sequence

TSD TIR

5'

3'

TT              AATACAGCCA   - CT         ATTTCTTTACAGCCTTTTTGCAGTCCACTCATATAATGGTTAGCTCATCACTATTAATACATGGCCCACTTATCTGTCTCACAGATTTT
  AGAGCAAGTATTAT          GCA G  GGCTGTAAG                                                                                         
  ||||||||||||||          ||| |  |||||||||                                                                                          
  TCTCGTTCATAATA          TCG C  CGACATTCG                                                                                         
AT              ----------   T --         GTCGATTTACGACTCCACCTCCTCTCTCTTCTCCTCTCTCTCATTTTCGCCCGACGTTCGAATGTCGGCCGAGTCTGTGTTTTTGGTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850365

TTAGAGCAAGTATTATAATACAGCCAGCAGCTGGCTGTAAGATTTCTTTACAGCCTTTTTGCAGTCCACTCATATAATGGTTAGCTCATCACTATTAATACATGGCCCACTTATCTGTCTCACAGATTTTCTTGGTTTTTGTGTCTGAGCCGGCTGTAAGCTTGCAGCCCGCTTTTACTCTCTCTCCTCTTCTCTCTCCTCCACCTCAGCATTTAGCTGGCTTACAGCCTGCTATAATACTTGCTCTTA

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