SE2850366

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9371
  • Sorghum bicolor
  • SE2850366
  • PIF/harbinger
  • To1
  • chromosome_2:63449945-63450182
  • TTA
  • AGGCCTTGTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT            CTTCCCAAAAATTT      -   CCCG ------------    TCGAATCTTTGGTCGCATGCATGGAGCATTAAATATAGACGAAAATAAAAACTAATTGCACAGTTTACCTGTAAT
  AGGCCTTGTTTA              TCAAGA TTC    T            CACA                                                                           
  ||||||||||||              |||||| |||    |            ||||                                                                           T
  TCCGGAACAAAT              CAAACG TTT    A            CGAT                                                                           
AT            --------------      T   ---- AAAATCCAAAAC    GACATCGTGAAAGCAAAAATAAACTGTTTGTAACAGGTTAGTATTTCATTGATCTGAGTTTTCTAAGTAGAGTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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