SE2850367

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9372
  • Sorghum bicolor
  • SE2850367
  • PIF/harbinger
  • To3
  • chromosome_2:3418832-3419080
  • TTA
  • AGGCCTTGTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT            -  T      AAAATTCCAATTTCGGCACTGTAGCATTTTCGTTTTTATTTAACAAATATTATTCAATTATAGACTACCTAGGCTCAAAAGATTCATCTCGTGATTTACAG
  AGGCCTTGTTTA GT CCGAAA                                                                                                     
  |||||||||||| || ||||||                                                                                                     A
  TCCGGAACAAAT AA GTGGGG                                                                                                     
AT            G  -      CTTTTGGTTTTTGAAAAGTTCTAAAGTGCAGTGTAGTTTAGAACCTCGTGTACGTACTTCATAATCTATATATGCTTTTATTTTTGATTAACGTGTCAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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