SE2850369

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9374
  • Sorghum bicolor
  • SE2850369
  • PIF/harbinger
  • To53
  • chromosome_7:53920897-53921178
  • TTA
  • AGAGCAACTCCAACAGATATGTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      A      C    AT T  TCCA   TA          -------   -   ATTTTTAAAGTAAAAATTAAAGTCCAACAGGTGTGCTATCTGGTTTGCTAAAATAGCAAGTTTGCTATTCCTAAACTTTCGCTTGT
  AGAGCA CTCCAA AGAT  G TA    TAT  TCTAGGCTAT       TTT TAC                                                                                      
  |||||| |||||| ||||  | ||    |||  ||||||||||       ||| |||                                                                                       
  TCTCGT GAGGTT TCTG  C AT    ATA  AGATTTGATG       TCG TAA                                                                                      
AT      A      C    AT C  TTTA   TA          TTCTAAA   T   CACATTTTATTTTTTGAGTGAGTTTTGTATCTCAAGGTGTTGTCGAAAACATATACTATCGATCACTCCTGCTGTACGATATATAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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