Plant MITE

SE2810370

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9375
Sorghum bicolor
SE2810370
Tc1/Mariner
St6
chromosome_3:30696660-30696920
TA
TACTCCCTCCGTCCCTGAAAGAATCAATTCCTAGG

Secondary structure and sequence

TSD TIR

5'

3'

                             C     ATCC  G  --                G         C   A           AACAAC   TATAATATAAAATACACATTATATGAAAATATATTTTA
TACTCCCTCCGTCCCTGAAAGAATCAATT CTAGG    GT CC  AGTCAAACTTTTTAAA TTTGACTAA TTT TAGAAAAGAGT      ATC                                      
||||||||||||||||||||||||||||| |||||    || ||  |||||||||||||||| ||||||||| ||| |||||||||||      |||                                       
ATGAGGGAGGCAGGGACTTTCTTAGTTAA GATCT    CA GG  TCAGTTTGAAAAATTT AAACTGGTT AAA ATCTTTTTTTA      GAT                                      
                             A     -CAA  -  AT                G         T   G           -----C   TCTAAATATCATAGTTTAATTATAATAATCTAAGTAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810370

TACTCCCTCCGTCCCTGAAAGAATCAATTCCTAGGATCCGTGCCAGTCAAACTTTTTAAAGTTTGACTAACTTTATAGAAAAGAGTAACAACATCTATAATATAAAATACACATTATATGAAAATATATTTTATGATGAATCTAATAATATTAATTTGATACTATAAATCTTAGCATTTTTTTCTAGAAATTTGGTCAAAGTTTAAAAAGTTTGACTTAGGACAACTCTAGAAATTGATTCTTTCAGGGACGGAGGGAGTA

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