Plant MITE

SE2810373

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9378
Sorghum bicolor
SE2810373
Tc1/Mariner
St13
chromosome_7:9371147-9371383
TA
TACTCCCTCCATCCCAAATTATAAGACGTTTGACTTTTTTATCTCAACTTTGACCACTCGTCTTATTCAAAAAATTTATGCAAA

Secondary structure and sequence

TSD TIR

5'

3'

     CC      C                         T  C    C        C          C         A      CATAGTCA   TTAAGTCATTCCTGAAGAACTTTTAT
TACTC  TCCATC CAAATTATAAGACGTTTGACTTTTT AT TCAA TTTGACCA TCGTCTTATT AAAAAATTT TGCAAA        AAT                          
|||||  |||||| ||||||||||||||||||||||||| || |||| |||||||| |||||||||| ||||||||| ||||||        |||                           
ATGAG  AGGTAG GTTTAATATTCTGCAAACTGAAAAA TG GGTT AAACTGGT AGCAGAATAA TTTTTTAAA ACGTTT        GTG                          
     TT      A                         C  T    C        A          -         C      ----TATA   AAGAAAACAACACCGAACCAAATAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810373

TACTCCCTCCATCCCAAATTATAAGACGTTTGACTTTTTTATCTCAACTTTGACCACTCGTCTTATTCAAAAAATTTATGCAAACATAGTCAAATTTAAGTCATTCCTGAAGAACTTTTATTAATAAACCAAGCCACAACAAAAGAAGTGATATTTTGCACAAATTTTTTAATAAGACGAATGGTCAAACTTGGTGTCAAAAAGTCAAACGTCTTATAATTTGAGATGGATTGAGTA

Copy Cancel