SE2850376

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9381
  • Sorghum bicolor
  • SE2850376
  • PIF/harbinger
  • To54
  • chromosome_3:3100613-3100745
  • TTA
  • GGCCCTGTTCGTTTACCTCTAGATGAGAGGGATTGAAAGGGGTAGAGGGGGATTTTGATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTA   CC         -     T    G GA   A   AA     -TA           T     GT
    GGC  TGTTCGTTT ACCTC AGAT A  GGG TTG  AGGGG   GAGGGGGATTT GATTT  
    |||  ||||||||| ||||| |||| |  ||| |||  |||||   ||||||||||| |||||  A
    CCG  ACAAGCAAA TGGGG TTTG T  CCC AAC  TCCCC   CTCTCCCTAAA TTAGG  
ATTC   -T         C     T    G AC   C   -C     TAA           -     GG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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