SE2850377

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9382
  • Sorghum bicolor
  • SE2850377
  • PIF/harbinger
  • To2
  • chromosome_5:43852447-43852695
  • TAA
  • AGGCCTTGTTTACTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 TGA      AGATTTCGTGACACTGTAGCACTTTCGTTTGTTTGTGGTAATTATTGTCTAATTATGGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTCGAC
  AGGCCTTGTTTACTTCC   ACGAAA                                                                                                 
  |||||||||||||||||   ||||||                                                                                                  
  TCCGGAACAAATGAAGG   GATTTT                                                                                                 
AA                 -TG      TGGGTTTTAAAAAGTTCTAAAGGACAGTGTAGTTTAGAAATCTGTGTACGTACCTCATAATTTATATCTGTTTTTATTTTTGATTAACGTGTCAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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