SE2850384

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9389
  • Sorghum bicolor
  • SE2850384
  • PIF/harbinger
  • To1
  • chromosome_3:71917620-71917857
  • TAA
  • AGGCCTTGTTTAGTTTGGGAAAATTTTTGGATTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                GGG         --       --   - CTGTAGCACTTTCGTTTGTTTGTGGCAAATATTATCCAATCATAGACTAACTAGGATCAAAAGATTCGTCTCGCGA
  AGGCCTTGTTTAGTTT   AAAATTTTT  GGATTTC  GCT A                                                                            
  ||||||||||||||||   |||||||||  |||||||  ||| |                                                                             
  TCCGGAACAAATCAAG   TTTTAAAAA  TCTAAGG  CAG G                                                                            
AA                -GG         GT       GG   T TAGCTTAGAATGCCGTGTACGTACTTCGTAATTTATATCTACTTTTGTTTTTGATTAATGCGTCAAATGGACATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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