SE2810386

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9391
  • Sorghum bicolor
  • SE2810386
  • Tc1/Mariner
  • St21
  • chromosome_1:72795065-72795455
  • TA
  • TACTCCCTCTGTCCCAAATTTACTGACGTTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
                      C           ---------- TC -     TA G  CCATAAAGAGTGTCGTTCTACTGGCTTGAATGTTGTGTGTCTGTAAGGATCGGTTACGACAATGATAGAATGTATGAGCAATTATGAACCATGTCCCAGCAAACATCATGATCTATTTGTTTAATGAAAAAATAATCAATGG
TACTCCCTCTGTCCCAAATTTA TGACGTTTTAG          C  T AGAAG  A TC                                                                                                                                              
|||||||||||||||||||||| |||||||||||          |  | |||||  | ||                                                                                                                                              A
ATGAGGGAGGCAGGGTTTAAAT ACTGCAAAATC          C  C ATGGT  C TT                                                                                                                                              
                      A           CTAACCACCG -- T     TT -  CTTTGTTTTACTGGACGTATGGGGAAACTTCAAGGTCAGAGATGTAGAAAATATACAGGTTAGTGACTATGTCAGTGTTTCCGGTTACGTCCGTCGTTGACAAAGGCAGTGACACCGTTGGAAAGCAGTTTTTGGTACGTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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