SE2850389

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9394
  • Sorghum bicolor
  • SE2850389
  • PIF/harbinger
  • To49
  • chromosome_2:5332704-5333057
  • TAA
  • AGGCCTTGTTTAGATGGGGAGTGAAAAGTTTTTGGGTGTCACATCGGATGTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TA            GAT ----GG  G      G      GGT            G   CATA      TAAAA        ---  GA   T  --TA      A    A     GTCGCG  GA  C              A             A     C  G   AT   TGG    C
  AGGCCTTGTTTA   G      GA TGAAAA TTTTTG   GTCACATCGGAT TTT    ATATGT     GGAGTATT   TG  TAC AA    AAAAAC AATT CATAG      TG  AA TGCGAGACGAATTT TTAAGCCTAATTA TCTGT AT AGC  GTG   GTTA 
  ||||||||||||   |      || |||||| ||||||   |||||||||||| |||    ||||||     ||||||||   ||  ||| ||    |||||| |||| |||||      ||  || |||||||||||||| ||||||||||||| ||||| || |||  |||   |||| T
  TCCGGAACAAAT   C      TT GTTTTT AAAAGT   TAGTGTAGCTTA AAA    TATACG     CTTCGTAA   AC  ATG TT    TTTTTG TTAA GTGTC      AC  TT GCGCTCTGCTTAGA AATTCGGATTAAT AGATA TA TCG  TAT   CGAT 
AA            AAT AAGGGG  G      G      AGG            G   TCTG      ---TA        TTT  AT   C  TTTA      A    C     AAACCA  AT  A              A             C     C  A   -G   TGA    G

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End