Plant MITE

SE2810396

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9401
Sorghum bicolor
SE2810396
Tc1/Mariner
St7
chromosome_2:62638798-62639061
TA
TACTCCCTCCATACCTATAAAACAAGTCGTTTTGGACAAGGTTTAGGTC

Secondary structure and sequence

TSD TIR

5'

3'

                                       -   TTA    AAACAT   GAA   AAATCATGAATAACTTTTAAGTTGTTGAGTTTGAAAATATGAGAACCATATGAATAGATTTGTCTTCAAAA
TACTCCCTCCATACCTATAAAACAAGTCGTTTTGGACAA GGT   GGTC      TGG   TAT                                                                       
||||||||||||||||||||||||||||||||||||||| |||   ||||      |||   |||                                                                       A
ATGAGGGAGGTATGGGTATTTTGTTCAGCAAAACCTGTT CCG   CCAG      GTT   TCA                                                                       
                                       A   -TG    ----AG   ---   GATTGAAACTGAAGAACAAAAAATATTTTTATAAATAGTTTTTCACCATATCTATATAAAAATACTTTCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810396

TACTCCCTCCATACCTATAAAACAAGTCGTTTTGGACAAGGTTTAGGTCAAACATTGGGAATATAAATCATGAATAACTTTTAAGTTGTTGAGTTTGAAAATATGAGAACCATATGAATAGATTTGTCTTCAAAAATACTTTCATAAAAATATATCTATACCACTTTTTGATAAATATTTTTATAAAAAACAAGAAGTCAAAGTTAGACTTTGGAGACCGTGCCATTGTCCAAAACGACTTGTTTTATGGGTATGGAGGGAGTA

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