SE2850397

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9402
  • Sorghum bicolor
  • SE2850397
  • PIF/harbinger
  • To16
  • chromosome_2:708095-708512
  • TAA
  • AGGGCACTCACAATGTAGACTCTATCATAGAGTCTAAAGTTATTTATTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    CAC   C    -T                     -------      T     CCTCGAACAATG   ACTTAGAGTCTAAATAAGACTTGGAGTCTTATTTTTTCTACCTCTTTCATCAATAAATATGCTGTCACATCAGCAAAATGCCATAAATAATATGTAATTAATTGTCTTGTACTATGTGATAGAGTCTTGCATTATGAGT
  AGGG   TCA AATG  AGACTCTATCATAGAGTCTAA       AGTTAT TATTA            TAG                                                                                                                                           
  ||||   ||| ||||  |||||||||||||||||||||       |||||| |||||            |||                                                                                                                                            
  TCCC   AGT TTAT  TCTGAGATAGTATCTCAGATT       TTAATA ATAAT            ACG                                                                                                                                           
AA    TTA   A    GT                     CTGTTAA      T     AAATATCATAAA   ACTACACCGTCATATAAATAACTTCTTTCTCCATGTTTTTTGTTTTGAGGTTCAGAATAAATCTGAGATTCAGGTGTAACAAGCTCCATTATCTATTGAAATCTGAGATACTGTCTCAGACGTAACACTCACGGTCCTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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