SE2810399

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9404
  • Sorghum bicolor
  • SE2810399
  • Tc1/Mariner
  • St22
  • chromosome_1:60534513-60534773
  • TA
  • TACTCCCTCCGGTCTATTTTATCTGGCGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                 -       ACAC     CCTAGATTACATTTTGACCATTCATTTACTTTATATTATATTATTTATGCTTATAAACTTATAATCATTGGATAGTATAATT
TACTCCCTCCGGTCTATTTTATCTGGCGCAGGT TAGAATG    GGTCT                                                                                  
||||||||||||||||||||||||||||||||| |||||||    |||||                                                                                   
ATGAGGGAGGCCAGGTAAAATAGACCGCGTGTG ATATAGT    TAAGT                                                                                  
                                 C       --TC     TTGAAAATTTTGAAATTGGTAATTAATCTGATTATTAATAATTGATAATATTGTGTTTAAAATATATTAATCTAAACATTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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