SE2830401

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9406
  • Sorghum bicolor
  • SE2830401
  • hAT
  • Hat32
  • chromosome_3:49071378-49071692
  • GATCATTG
  • GATCATTGGCGGACCTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
           T           -   CTTTCTAGAGCCCGGGCGAAATATGACCATTGATAAGTGATAACAAGTTATATAAACATATTTCTACAAACAAAAAAAAAATAGCACAGCCCCCTCAGTGCAATGGCTGCCCATTTATGAGTTGGGCTGCCTC
     GATCAT GGCGGACCTAG AGA                                                                                                                                     
     |||||| ||||||||||| |||                                                                                                                                     C
     CTGGTA CCGCCTGGGTC CGG                                                                                                                                     
TAGTT      T           C   GCCGCTGGGATCCGCGGACGGACCCGACGGTGCGACGCGAACCCACCTATGCGATAGTACGACTCGAACATGCTTATGATCGGTTCGTTTCTTTATGTGTCCAAACACATCGTTGTCGTCTAGTAGTCCATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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