SE2850403

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9408
  • Sorghum bicolor
  • SE2850403
  • PIF/harbinger
  • To12
  • chromosome_1:67114923-67115171
  • TAA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                ACGC      CCA          ----A      CCCATCACATCAAATCTTGTAGCACATGCATGAGAGATTAAATATAGACGAAAACAAAAACTAATTACACAGTTTA
  AGGCCTTGTTTAGTTC    TGAAAA   AAAAGTTTTC     AGATTT                                                                            
  ||||||||||||||||    ||||||   ||||||||||     ||||||                                                                            G
  TCCGGAACAAATCAAG    GCTTTT   TTTTCAAAAG     ACATCG                                                                            
AA                ----      CAC          CCACG      TGAAAGCAAACAAACACTATTTATAATAGGTTAGTACCTGATTGATCCTAGTTTTCTAAGCAGAGCACTAAATGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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