Plant MITE

SE2850405

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9410
Sorghum bicolor
SE2850405
PIF/harbinger
To2
chromosome_7:55733520-55733768
TAA
AGGCCTTGTTTAGTTCC

Secondary structure and sequence

TSD TIR

5'

3'

TA                 ATCC     CCC        TCAA   T -----    ------------------------ CA    GTATCTTTAGACGCATGCATGGAGTATTAAATATAGACAAAAATAAAAACTAATT
  AGGCCTTGTTTAGTTCC    AAAGA   AAAATTTT    GAT C     TCCG                        T  CATC                                                       
  |||||||||||||||||    |||||   ||||||||    ||| |     ||||                        |  ||||                                                       G
  TCCGGAACAAATCAAGG    TTTCT   TTTTAAGA    CTG T     CGTG                        C  AGAT                                                       
AA                 --AC     --T        --CA   - GACAT    AAAGCAAACAAACACCATTAATAA --    TGATATCTGATTGAACCAAGTTTTCTAAGCAGAGTAATTAAAGCTGGTTTGACAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850405

TAAGGCCTTGTTTAGTTCCATCCAAAGACCCAAAATTTTTCAAGATTCTCCGTCACATCGTATCTTTAGACGCATGCATGGAGTATTAAATATAGACAAAAATAAAAACTAATTGCACAGTTTGGTCGAAATTAATGAGACGAATCTTTTGAACCAAGTTAGTCTATAGTTAGACAATAATTACCACAAACAAACGAAAGTGCTACAGTGTCACAGAATTTTTTCTTTCAGGAACTAAACAAGGCCTAA

Copy Cancel