SE2850407

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9412
  • Sorghum bicolor
  • SE2850407
  • PIF/harbinger
  • To57
  • chromosome_10:51262112-51262462
  • TAA
  • AGGGCAACCACAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              ATATATAGAC     -        -------TAAGC    T    GTCAGTGGACAATAGCTATTGTTGTTTTCACAATGTTTCAGTCAACAACTAGTCCATAAAGTGGGTCCCATATAAGACAAAAAATTATTTCTCTTTACAATCCTGTGCAAAGCCAAGAAA
  AGGGCAACCACAAT          TAAGT AGTCCATA            AGCT TTGT                                                                                                                        
  ||||||||||||||          ||||| ||||||||            |||| ||||                                                                                                                         
  TCTCGTTGGTGTTA          ATTCA TCAGGTAT            AACG ATAG                                                                                                                        
AA              --CACACGGT     A        CCTAATTTTATA    -    TCCATTGACCTTGTGACACTCTGGTCAGGTATTTCCTCAGGTATCGTTTTCTATAGGTATTCGAATACCTGATGGGTATCCCTTATTTTTTACGATGAAAAAGAGTGAGGAGTGAGAGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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