SE2810409

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9414
  • Sorghum bicolor
  • SE2810409
  • Tc1/Mariner
  • St3
  • chromosome_3:3768113-3768518
  • TA
  • TACTCCCTCCATACTCATATTAGTTGACGTTTAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
               CA     GT  A     A  ACAG    ---  G        ---  - GCAA  -   TA       TCTTTCCATCCTTACCCTTATTAAATAGAGGTGTGGATGCACTTTATACAAGAAAGTTTTCAGCTTAGATGGTTAATGTATCGAGGCGTGACTCCAGCGATCTGCGTTCGATTCCTGGCAGCCACTTA
TACTCCCTCCATACT  TATTA  TG CGTTT GG    GATT   GT CTTACCAA   GA A    TT AAT  GGGGGTA                                                                                                                                
|||||||||||||||  |||||  || ||||| ||    ||||   || ||||||||   || |    || |||  |||||||                                                                                                                                T
ATGAGGGAGGTATGG  ATAAT  AC GCAAG CC    CTAA   GA CTAAAACG   CC A    CA CAA  CTCGGAC                                                                                                                                
               AC     GT  A     A  --AA    GAA  -        TTT  A ----  G   --       ATTTATAGAGACGTACCTGTGCAAACGGGGACCGCGCTGTACGTTAATTGGTGTCGGCGAGTGAAGCTAGCTACGTTAAGCGAGCTGTACGTTAATTGGTGTCGGTGTTTTGGTTCAGGGGTGGTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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