Plant MITE

SE2810412

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9417
Sorghum bicolor
SE2810412
Tc1/Mariner
St23
chromosome_1:21276957-21277185
TA
TACTCCCTCCGTCCTGAAATAGGCATTGTG

Secondary structure and sequence

TSD TIR

5'

3'

         C      A   AG   T    A     A    ----- -  -     AAATACAATGCATTCTACATGATGACTATGTTTTGATTTGGTAAGTTTTGTTAAAAAGAAGCC
TACTCCCTC GTCCTG AAT  GCA TGTG CTTCT AAAT     T TG TATTG                                                               
||||||||| |||||| |||  ||| |||| ||||| ||||     | || |||||                                                               A
ATGAGGGAG CAGGAC TTA  TGT ACGC AGATA CTTA     C GT AATTC                                                               
         A      A   --   C    A     -    AAATT T  T     CCTTGTGAGTTTACTGTGTACATGGGTATCTAATAAGGTTAATATCTCAAAGAGGAGTTTAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810412

TACTCCCTCCGTCCTGAAATAGGCATTGTGACTTCTAAAATTTGTATTGAAATACAATGCATTCTACATGATGACTATGTTTTGATTTGGTAAGTTTTGTTAAAAAGAAGCCATGATTTGAGGAGAAACTCTATAATTGGAATAATCTATGGGTACATGTGTCATTTGAGTGTTCCCTTAATTGTCTTAAAATTCATAGAACGCACTGTATTACAGGACAGAGGGAGTA

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