SE2850415

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9420
  • Sorghum bicolor
  • SE2850415
  • PIF/harbinger
  • To49
  • chromosome_1:3955755-3956102
  • TAA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3'
TA               TCCAATCCAAAAAG    CACTCAC              G ACGCATACAT    ----TATTAA    A         TAA          C     A    A    CC     CA   CTT     C      C   C  G         A   CTACA
  AGGCCTTGTTTAGTT              TTTT       CACATCGAATGTTT G          GGAA          ATAT AATAAAAAA   ACTAATTATA AGTTT GTTG AAAT  TGAGA  AAT   TTAAG CTAGTT GTC AT ATTAGCTTA GTA     
  |||||||||||||||              ||||       |||||||||||||| |          ||||          |||| |||||||||   |||||||||| ||||| |||| ||||  |||||  |||   ||||| |||||| ||| || ||||||||| |||     G
  TCCGGAACAAATCAA              AAAA       GTGTAGTTTACAAA C          CCTT          TATG TTATTTTTT   TGATTAATGT TTGAA CGAC TTTG  GCTCT  TTA   AATTC GATTAA TAG TA TAATCGAGT CAT     
AA               TCTCCTATTAAAAA    -CCCACA              G -ATCTTACAC    CTCACAAACG    A         ---          A     C    A    AC     AC   AAT     A      T   A  G         A   CCAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End