SE2850420

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9425
  • Sorghum bicolor
  • SE2850420
  • PIF/harbinger
  • To1
  • chromosome_4:5880073-5880322
  • TAA
  • AGGCCTTGTTTAGTTCATCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             TTC    CAAAAACCAAAAACTTTT    ATTCTCTATCACATCGAATCTTGCGGCACATGCATGAAGCATTAAATATAGATAAAAACAAAAACTAATTGCACAGTTTGTCTGTAAATCA
  AGGCCTTGTTTAG   ATCC                  CAAG                                                                                           
  |||||||||||||   ||||                  ||||                                                                                           C
  TCCGGAACAAATC   TAGG                  CTTA                                                                                           
AA             ---    ------------------    AAAAAAAACCTAAGACTGTGACATCGTAAAAGCAAAAATAAACTGTTTGTAATAGGTTAGTATCTCGTTGATCCGAATTTTCTAAGCAGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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