SE2850423

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9428
  • Sorghum bicolor
  • SE2850423
  • PIF/harbinger
  • To58
  • chromosome_1:9580163-9580431
  • TAA
  • AGGGCCTGTTTGGATCACGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 C    ------      C  -  T AGTAAAGTTTGACAGCCACACTAATCTTGGCAGTTGTTTGGTTCTATTTTAACCTTAGGCAGCCACAAAATTCTGCCATGTCGTTTTTCTCCCA
  AGGGCCTGTTTGGATCA GGCC      ACAACT GC TA G                                                                                              
  ||||||||||||||||| ||||      |||||| || || |                                                                                              T
  TCCCGGACAAACCTAGT CCGG      TCGGTG GG AC G                                                                                              
AA                 A    TATGTT      C  T  - TAGTCGTTTCACGCCGAGCGGTGTCCAACGCCGCCTCTTTAACCGGTGCGAGCGGTGTTCAAACGGTGTCAGATGTACGTGATTCGCTGTACGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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