Plant MITE

SE2850424

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9429
Sorghum bicolor
SE2850424
PIF/harbinger
To49
chromosome_6:49799799-49800150
TAA
AGGCCCTGTTTAG

Secondary structure and sequence

TSD TIR

5'

3'

TA   CC        TTCCCTACCC          CATCCA  C     -AATCT     CAC   CAT   --    TAAATGTAGATAAAAAAATAAACTAATTACACAGTTTAGTTAAGAATCGCGAGACGAATCTTTTAAGCCTAGTTACTCCATGATTAGCCTTAAGTGCTAC
  AGG  CTGTTTAG          AAAATTTTTT      TC CATCG      TTGGA   ATG   GGA  ACAT                                                                                                    
  |||  ||||||||          ||||||||||      || |||||      |||||   |||   |||  ||||                                                                                                     
  TCC  GACAAATC          TTTTAAAAAA      AG GTAGC      AGCCT   TAC   CCT  TCAA                                                                                                    
AA   CA        TAACCCTTGC          -CCCAC  T     CTACAC     TCC   AGC   CC    AAATCTTTGATTATTTTTTTGTTTAATTTATCGAGCAGTCCTTTGACGTTCTGTTTAAATAATTCGTGTTAATTAGACAGTAATCGTATACACCCAATGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850424

TAAGGCCCTGTTTAGTTCCCTACCCAAAATTTTTTCATCCATCCCATCGAATCTTTGGACACATGCATGGAACATTAAATGTAGATAAAAAAATAAACTAATTACACAGTTTAGTTAAGAATCGCGAGACGAATCTTTTAAGCCTAGTTACTCCATGATTAGCCTTAAGTGCTACAGTAACCCACATATGCTAATGACAGATTAATTGTGCTTAATAAATTTGTCTTGCAGTTTCCTGACGAGCTATTTAATTTGTTTTTTTATTAGTTTCTAAAAACTCCTCCCGACATCCTTCCGACACATCCGATGTGACACCCAAAAAATTTTCGTTCCCAATCTAAACAGACCCTAA

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