SE2810427

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9432
  • Sorghum bicolor
  • SE2810427
  • Tc1/Mariner
  • St3
  • chromosome_8:10979895-10980352
  • TA
  • TACTCCCTCCATATC

Secondary structure and sequence

TSD    TIR
5'



3' 
               --------    - TT TTGACGTTTAGGACATGATTGTGGTAACCAAGGAGTGATTAATTAGAGGTTAGTTTTCCATGTCTACCCTTAATAAATAAGTTTGCGAGTTTTCTCTATACATAAAAATAAACCAGTTCAGCTGGTCAGTGCATAGACCCTAGAGTATTGGGTCGCGAGTTCGAGCCCCGGTGGCCACTCATTTTTTGCCCTGCGGCAGTGG
TACTCCCTCCATATC        CATA A  C                                                                                                                                                                                                          
|||||||||||||||        |||| |  |                                                                                                                                                                                                          G
ATGAGGGAGGTATGG        AACT C  A                                                                                                                                                                                                          
               ACAAAATC    G -- AAATCTGGTGAGTTCACAAAAGTATTTCGAACTGCAAGACCGGTATATTCCGAGTATTACCTGAAAAAATGGGGACGGGTGGGTGCGACAGGTGGTGAACGACGCGACGATCGTAAGTTACGCGACGGGTCCCTTTGCGCGGACGGCGGAGCGTACGTGCGGGCGACGACGTCCCTTTGCGCGGACGGCGGAGCGTACGTGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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