SE2830436

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9441
  • Sorghum bicolor
  • SE2830436
  • hAT
  • Hat33
  • chromosome_3:9459325-9459896
  • CTACCAAC
  • CAATGTTTTAAATAGTGGGCTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTACCAAC                 G     -AGA           TCCTGTCCCAGACGCTATTTGCGCTATAGCGAACGCTATAGCGGCGCTATAGCACCGCTATAGCGGCTGCTTTACACAGCAGCGTGTTGTAGCTATCCACGCTATAGCGATGCTATTGCGGCGCTATAGCGCGCTATTTATTTCGAAACAGACAAAATATATAATAGACAGCAACAAGTTCAAACAACCATCATATTTCACAATCACAAATCATAAATCACAAATCACAGGTGTTTCACA
        CAATGTTTTAAATAGTG GCTAT    AAATAGCGTCT                                                                                                                                                                                                                                                
        ||||||||||||||||| |||||    |||||||||||                                                                                                                                                                                                                                                G
        GTTACAAAATTTATCGC CGATA    CGCGATATCGC                                                                                                                                                                                                                                                
CAACCATC                 G     AAAG           GAGATATCGCAGGTCTTATTCAGCTGCGCTTCGATATGGAGTAAAAATGCGATAGTAGCGATAACCGCGATATCGAGCGATAACGCGACGATTTGACTTTATCGCGGTATCGCGGCGATAAACGCACGATAACGACAAATAAACACTAGTACAACAGTACGTGAATAAACAACACAACAAGAATACGTGATACGTCAGTACGTAATACGAATACTCAATCAATACATAATTTGTAAATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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