Plant MITE

SE2850439

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9444
Sorghum bicolor
SE2850439
PIF/harbinger
To1
chromosome_3:59429679-59429926
TAT
GGCCTTGTTTAG

Secondary structure and sequence

TSD TIR

5'

3'

TAT  C         TTTACC      ACCAAAAACTTTT       -------------------- TCCGTCACATCGAATTTTGCGGCACATGCATGGAGTATTAAATATAGATGAAAACAAAAACTAATTGC
   GG CTTGTTTAG      CAAAAA             CAAGATT                    C                                                                    
   || |||||||||      ||||||             |||||||                    |                                                                     
   CC GAACAAATC      GTTTTT             CTGTGAC                    C                                                                    
TAT  A         ----TA      CAAAAATCTAAAA       ATCATAAAAATAAAAATAAA TGTTTGTAACAGATTAGTATCTCATTGATCCGAATTTTCTAAACAGAGCACTAAATGTCTGTTTGACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850439

TATGGCCTTGTTTAGTTTACCCAAAAAACCAAAAACTTTTCAAGATTCTCCGTCACATCGAATTTTGCGGCACATGCATGGAGTATTAAATATAGATGAAAACAAAAACTAATTGCACAGTTTGTCTGTAAATCACGAGACAAATCTTTTAAGCCTAGTTACTCTATGATTAGACAATGTTTGTCAAATAAAAATAAAAATACTACAGTGTCAAAATCTAAAAACTTTTTGATCTAAACAAGACCTAT

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