SE2850442

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9447
  • Sorghum bicolor
  • SE2850442
  • PIF/harbinger
  • To2
  • chromosome_3:70550169-70550417
  • TAA
  • AGGCCTTGTTTAGTTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            G    -        AATATTTTACGACACTATAGCACTTTCGTTTGTTTATGGTAATTATTGTTCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTTGTCAATTTCGA
  AGGCCTTGTTTA TTCT TGATGGGA                                                                                                 
  |||||||||||| |||| ||||||||                                                                                                  
  TCCGGAACAAAT AAGG GGGTTTTT                                                                                                 
AA            G    T        GGGTTTAAAAAAATTCTAAGAGGCAGTGTAGCTTAGAAATCTGCATACGTACCTCATAATTTATATCTGCTTTTATTTTTGATTAATGTGTCAAACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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