Plant MITE

SE2850447

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9452
Sorghum bicolor
SE2850447
PIF/harbinger
To4
chromosome_4:6870464-6870700
TTA
AGGCCTTGTTTAGTTT

Secondary structure and sequence

TSD TIR

5'

3'

TT                TCAA       ---  ---     CCTTGTCACATCGAATCTTGCGACACATGCATAAAGTATTAAATATAGATAAAAAGATAGCTAATTGCACAGTTTACCTG
  AGGCCTTGTTTAGTTT    AAATTTT   CA   AGATT                                                                                
  ||||||||||||||||    |||||||   ||   |||||                                                                                 
  TCCGGAACAAATCAAG    TTTAAAA   CT   ACGAT                                                                                
AT                -CAC       AAC  AAA     GACATCGTGAAAGCCGAAATAAACCGTTAATAATAAGTTAATATCTGATTGATCCGAGTTTTCTAAGTAGAGCATTTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850447

TTAGGCCTTGTTTAGTTTTCAAAAATTTTCAAGATTCCTTGTCACATCGAATCTTGCGACACATGCATAAAGTATTAAATATAGATAAAAAGATAGCTAATTGCACAGTTTACCTGTAATTTACGAGATGAATCTTTTGAGCCTAGTTAGTCTATAATTGAATAATAATTGCCAAATAAAGCCGAAAGTGCTACAGTAGCAAAATCCAAAAAATTTCACGAACTAAACAAGGCCTTA

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