SE2850452

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9457
  • Sorghum bicolor
  • SE2850452
  • PIF/harbinger
  • To18
  • chromosome_10:6407567-6407813
  • TAA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             T  ACCCC    T TAAAAAGTTTTCAAGATTCCCTGTCACATCGAATCTTGTGGCACATGCATGAAACATTAAATATAGACGAAAACAAAAACTAATCACACAGTTTGAC
  AGGCCTTGTTTAG TC     GAAA C                                                                                                 
  ||||||||||||| ||     |||| |                                                                                                 T
  TCCGGAACAAATC AG     GCTT T                                                                                                 
AA             T  -----    - TAAAAAATCTAAAGCGATGACATCGTGAAAACAAACAAACACCATTTATAACAGGTTAGTATCTGATATCCCAGTTTTCTAAACAGAGTGCTAAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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