SE2850453

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9458
  • Sorghum bicolor
  • SE2850453
  • PIF/harbinger
  • To1
  • chromosome_1:48420649-48420886
  • TAA
  • AGGCCTTGTTCAGTTCGCAAAATTTTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA          C     GC           GATTTTGACAC   A   CTTTCGTTTTTATTTGACAAACATTGTCCAATTATGGAGTAACTAGACTTAAAAAATTTGTCTCGTGATTTACAGA
  AGGCCTTGTT AGTTC  AAAATTTTTTG           TAT GCA                                                                            
  |||||||||| |||||  |||||||||||           ||| |||                                                                             
  TCCGGAACAA TCAAG  TTTTAAAAAGC           TCT AAG                                                                            
AA          A     GT           -----------   -   GGGCAGTATAGCTTAGAATGCCGTGTACGTACTACGTAATTCATATGTACTTTTGTTTTTGATTAACATGTCAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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