SE2850456

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9461
  • Sorghum bicolor
  • SE2850456
  • PIF/harbinger
  • To1
  • chromosome_7:51080615-51080863
  • TAA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                ACCCCGAAATCC          CAA      TC   A ATCGAATCTTGCGGCACATGCATGAAGCATTAAATATATACGAAAACAAAAACTAATTACACAGTTTGTCTGTAAA
  AGGCCTTGTTTAGTTC            AAAAAGTTTT   GATTTC  GTC C                                                                            
  ||||||||||||||||            ||||||||||   ||||||  ||| |                                                                             
  TCCGGAACAAATCAAG            TTTTTTAAAG   CTAAAG  CGA T                                                                            
AA                ----------AC          --C      --   - GACATCGTAAAAGCAAAAATAAACTGTTTATAATAGGTTAGTATTTGATTGATCCTAGTTTTCTAAGCAGAGCGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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