SE2850458

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9463
  • Sorghum bicolor
  • SE2850458
  • PIF/harbinger
  • To62
  • chromosome_2:76304106-76304508
  • CTA
  • TAGAGCAACTCCAACACTACCCTATATGCACTTGGCAAATC

Secondary structure and sequence

TSD    TIR
5'



3'
C                        T  -G             CTAAT     G   AACA  GAA       ----   CAACACTACCCTATATGCACTTGGCAAAATAGGATGCTTGGCAAAAAGAGGGCCAACTGGCTCAAATTTAGGAGCGTTGGGAGCGCTTGGCATCCTGCCTACGCGGTGGGACCCACACATTCAGCA
 TAGAGCAACTCCAACACTACCCTA AT  CACTTGGCAAATC     TTTTG CAA    TG   AAAGCTC    CTC                                                                                                                              
 |||||||||||||||||||||||| ||  |||||||||||||     ||||| |||    ||   |||||||    |||                                                                                                                              T
 ATCTCGTTGAGGTTGTGATGGGAT TG  GTGAACCGTTTAG     AAAAC GTT    AC   TTTCGAG    CGG                                                                                                                              
A                        T  AA             AACCT     G   ---C  --A       TTTA   TTCACTTTTTTTCTCCGAAGAGGTTGTCAATCGATAAAAAAACCGTTTAAACCTGATAGAACACTAAGGACTTTTTTAGTCTCTCTGAAAATACGTTTTCAACGTTAGATAAATTCCGTACACACG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End