SE2830460

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9465
  • Sorghum bicolor
  • SE2830460
  • hAT
  • Hat36
  • chromosome_4:53975173-53975355
  • CTTAGTAC
  • GTACCAGGGGCGAAGCTGCGTTGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTA    ----   G         ---  --      --CTCA      GCAAATGCACCCCCCAAAATATTCAAAAACAGTAGATTTAGTTAAAATT
    GTAC    CAG GGCGAAGCT   GC  GTTGGA      GGGGGT                                                 
    ||||    ||| |||||||||   ||  ||||||      ||||||                                                  
    CATG    GTC CCGCTTCGA   CG  TAATCT      ACGTAG                                                 
        ATTC   A         TCT  TT      CTCCCC      ATCGAACACCTACGTATTTCTAACTAACATCCCCCACGTATATACCACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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