SE2850461

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9466
  • Sorghum bicolor
  • SE2850461
  • PIF/harbinger
  • To2
  • chromosome_4:2668603-2669108
  • TTA
  • AGGCCTTGTTTACTTTCAAAAAATTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TT     T      C    ------          ACAAAATA G    --          -       ATT   CAAA                                             C    C       A                A                    C         AC                      A      -      T    CAAACTTTTTCA    C            T   TT
  AGGCC TGTTTA TTTC      AAAAAATTTT        G AATA  GTAGCACTTT CGTTTGT   TGA    TATTGTCTAATTATGGACTAACTAGGCTCAAAAGATTCGTTTCGT AATT CGACCAA CTGTGCAATTAGTTTT ATTTTCATCTATATTTAATA TCCATGCAT  GTCTAAAGATTCGATGTGATGG GAATCT GAAAAA TTTG            GGAA TAGACAAGGCCT ATT  
  ||||| |||||| ||||      ||||||||||        | ||||  |||||||||| |||||||   |||    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| |||||||||||||||||||| |||||||||  |||||||||||||||||||||| |||||| |||||| ||||            |||| |||||||||||| |||   
  TCCGG ACAAAT AAGG      TTTTTTAAAG        C TTGT  CATCGTGAAA GCAAACA   ACT    ATAACAGGTTGGTATCTGATTGATCCGAGTTTTCTAGGCAGAGCA TTAA GCTGGTT GACACGTTAATCAAAA TAAAAGTAGATATAAATTAT AGGTATGTA  CAGATTTCTAAGCTACACTGCC CTTAGA CTTTTT AAAT            CCTT ATTTGTTCCGGA TAA  
AT     C      C    ACTACC          -------- G    AA          A       AAC   ATTG                                             T    A       -                A                    A         CA                      C      A      T    -CCAAAACCCCA    C            T   CA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End