SE2810465

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9470
  • Sorghum bicolor
  • SE2810465
  • Tc1/Mariner
  • St8
  • chromosome_5:4459872-4460018
  • TA
  • TACTCCCTCCATAAACTATAAGATGTTTTGACTTTTCTAGAAACGTAGCTTTTGCTATGCACTTAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
         ---CA    C              A          A    A            CAC      ATAC
TACTCCCTC     TAAA TATAAGATGTTTTG CTTTTCTAGA ACGT GCTTTTGCTATG   TTAGAT    
|||||||||     |||| |||||||||||||| |||||||||| |||| ||||||||||||   ||||||     
ATGAGGGAG     GTTT ATATTCTACAAAAC GAAAAGATCT TGTA CGAAAATGATAC   GATCTA    
         ACAAG    A              C          A    A            ATA      ATCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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