Plant MITE

SE2830472

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9477
Sorghum bicolor
SE2830472
hAT
Hat1
chromosome_10:14094990-14095171
TTGGCCAT
TGGCCATCAGGGGCGAAGGTAGGTAG

Secondary structure and sequence

TSD TIR

5'

3'

T      T   G       G   -    -----------------TAACTA   ---    --- AAATGCACCCCCAAATTTTTTGAAAATAGTGGTTTTCT
 TGGCCA CAG GGCGAAG TAG GTAG                       GGG   GGTG   C                                      
 |||||| ||| ||||||| ||| ||||                       |||   ||||   |                                       
 ACCGGT GTC CCGCTTC ATC CGTT                       GTA   ACGT   T                                      
T      T   A       G   T    TTAATTTCTCCCACGTAAACCCA   CCC    ATT GAACACAATAACACCCACGTATATACCACTTTTAAATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830472

TTGGCCATCAGGGGCGAAGGTAGGTAGTAACTAGGGGGTGCAAATGCACCCCCAAATTTTTTGAAAATAGTGGTTTTCTCTAAATTTTCACCATATATGCACCCACAATAACACAAGTTTATGCACCCATGACCCAAATGCACCCTCTTTAATTTTGCTCTAGCTTCGCCACTGTTGGCCAT

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