SE2850474

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9479
  • Sorghum bicolor
  • SE2850474
  • PIF/harbinger
  • To1
  • chromosome_4:11400468-11400941
  • TTC
  • GGCCTTGTTTAGTTCCGAAAAGT

Secondary structure and sequence

TSD    TIR
5'



3'
TTC           G   C       GAAAAGT                C        GTTTG           A      C                                          C                  ---------                             A   T               A                   T    A            GCT
   GGCCTTGTTTA TTC GAAAAGT       TTTCGCTACTGTAGCA TTTCGTTT     TGACAAATATT TTTAAT ATAGACTAACTAGGATCAAAAGATTCGTCTCGTGATTTACAG TAAACTGTGTAATTAGTT         GTCTATATTTAATGTTTCATGCATGTGCC CAA ATTCGATGTGACGGA AATCTTGAAAACTTTTTGG TTTC GGGTGAACTAAG   
   ||||||||||| ||| |||||||       |||||||||||||||| ||||||||     ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||         ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||    
   CCGGAACAAAT AAG TTTTTTA       AAAGCGATGACATCGT AAAGCAAA     ACTGTTTATAA AGGTTA TATTTGATTGATCCTAGTTTTCTAAGCAGAGCACTAAATGTC GTTTGACATATTAATCAA         TAGATATAAATTACAAAGTACGTACACGG GTT TAAGCTACACTGCCT TTAGAACTTTTGAAAAACC AAAG CCCACTTGATTT   
CTT           G   T       -AAGCCT                A        AATAA           C      A                                          T                  AAACAAAAG                             C   C               C                   T    C            GTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End