SE2820477

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9482
  • Sorghum bicolor
  • SE2820477
  • Mutator
  • M10
  • chromosome_4:669694-670141
  • GCCCCTTAT
  • GGCAAAATATTCAGTGCAAACTACATCTTCGGTGCAATCGTGAAAATCCT

Secondary structure and sequence

TSD    TIR
5'



3'
GCCCCTTAT           CA                                     TTGC    C               TCA       T             -  C                  A                                                                                    G       A  C
         GGCAAAATATT  GTGCAAACTACATCTTCGGTGCAATCGTGAAAATCCT    AAAA CATACTTAGGAGTTT   AAAAAAA TAAAACTATGCAC AA AATAGTGCATCTATAGAT TGCATTGTCACAAAATTTGAGATTCAAACTCGTTTTGCGAAAATTCATATGAAAATAACAAATTTTATTTGCATATGCACTAGA GACAAAA TC 
         |||||||||||  |||||||||||||||||||||||||||||||||||||    |||| |||||||||||||||   ||||||| ||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || A
         CCGTTTTATAA  CACGTTTGGTGTAGAAGCCACGTTAGCACTTTTGGGG    TTTT GTATGAATCCTCAAA   TTTTTTT ATTTTGATACGTG TT TTATCACGTAGATATCTA ACGTAACAGTGTTTTAAACTCTAAGTTTGAGTAAAACGCTTTTAAGTATACTTTTATTGTTTAAAGTAAACGTATACGTGATCT CTGTTTT AG 
TATTCCCCG           AC                                     -TAA    A               ---       T             C  T                  C                                                                                    A       A  G

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End