SE2850479

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9484
  • Sorghum bicolor
  • SE2850479
  • PIF/harbinger
  • To1
  • chromosome_3:2560658-2560906
  • TTA
  • AGGCCTTGTTTAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT              TCACCCAAAAAACCAAAAACTTTTT      TCC GTCACATCGAATCTTGCGGCACATGCATGGAGCACTAAATATAGACGAAAATAAAAACTAATTGCACAATTTACTTGTAAATCATGA
  AGGCCTTGTTTAGT                         AAGATT   C                                                                                       
  ||||||||||||||                         ||||||   |                                                                                       G
  TCCGGAACAAATCA                         AGGCTT   T                                                                                       
AT              -------------------------      --- AAAAAAACCAAAAGCCTTGACATCGTGAAAGCAAAAATAAACTGTTTGTAACAGGTTAGTACTTCATTCATGCGAATTTTCTAAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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