Plant MITE

SE2850480

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9485
Sorghum bicolor
SE2850480
PIF/harbinger
To1
chromosome_7:5103449-5103685
TAA
AGGCCTTGTTCAGTTCGCAAAAATTTTTGGATTTCGACACTGTAGCAC

Secondary structure and sequence

TSD TIR

5'

3'

TA          C    C             -      --GA   ---------   A    TTTCGTTTTTATTT     ACATTGTCCAATCATGGAGTAATTAGGCTTAAAAGATTCGTCTCGCGATTT
  AGGCCTTGTT AGTT GCAAAAATTTTTG GATTTC    CAC         TGT GCAC              GACAA                                                   
  |||||||||| |||| ||||||||||||| ||||||    |||         ||| ||||              |||||                                                    
  TCCGGAACAA TCAA TGTTTTTGAAAGT CTAAGG    GTG         ACG CGTG              TACGT                                                   
AA          A    -             T      AGTA   TAGCTTAGA   C    --------------     ACCACGTAATTTATATGTACTTTTATTTTTGATTAACATGTCAAGTAGACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850480

TAAGGCCTTGTTCAGTTCGCAAAAATTTTTGGATTTCGACACTGTAGCACTTTCGTTTTTATTTGACAAACATTGTCCAATCATGGAGTAATTAGGCTTAAAAGATTCGTCTCGCGATTTACAGATGAACTGTACAATTAGTTTTTATTTTCATGTATATTTAATGCACCATGCATGTGCCGCAAGATTCGATGTGATGAGGAATCTTGAAAGTTTTTGTAACTAAACAAGGCCTAA

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